Publications

Loren Koçillari, Mark E. Olson, Samir Suweis, Rodrigo P. Rocha, Alberto Lovison, Franco Cardin, Todd E. Dawson, Alberto Echeverría, Alex Fajardo, Silvia Lechthaler, Cecilia Martínez-Pérez, Carmen Regina Marcati, Kuo-Fang Chung, Julieta A. Rosell, Alí Segovia-Rivas, Cameron B. Williams, Emilio Petrone-Mendoza, Andrea Rinaldo, Tommaso Anfodillo, Jayanth R. Banavar, Amos Maritan (2021). The Widened Pipe Model of plant hydraulic evolution. Proceedings of the National Academy of Science.

Carlos A Plata, Stefano Marni, Amos Maritan, Tommaso Bellini, Samir Suweis (2021). Statistical physics of DNA hybridization. Physical Review E.

María J Palazzi, Albert Solé-Ribalta, Violeta Calleja-Solanas, Sandro Meloni, Carlos A Plata, Samir Suweis, Javier Borge-Holthoefer (2021). An ecological approach to structural flexibility in online communication systems. Nature communications.

Giulia Cencetti, Gabriele Santin, Antonio Longa, Emanuele Pigani, Alain Barrat, Ciro Cattuto, Sune Lehmann, Marcel Salathe, Bruno Lepri (2021). Digital proximity tracing on empirical contact networks for pandemic control. Nature communications.

Stefano Garlaschi, Deepak Gupta, Amos Maritan, Sandro Azaele (2021). Ginzburg-Landau amplitude equation for nonlinear nonlocal models. Physical Review E.

Carlos A. Plata, Emanuele Pigani, Sandro Azaele, Violeta Calleja-Solanas, María J. Palazzi, Albert Solé-Ribalta, Javier Borge-Holthoefer, Sandro Meloni, Samir Suweis (2021). Neutral theory for competing attention in social networks. Physical Review Research.

Chengyi Tu, Paolo D’Odorico, Samir Suweis (2021). Dimensionality reduction of complex dynamical systems.. iScience.

Matteo Serafino, Giulio Cimini, Amos Maritan, Andrea Rinaldo, Samir Suweis, Jayanth R. Banavar, Guido Caldarelli (2021). True scale-free networks hidden by finite size effects.. Proceedings of the National Academy of Science.

Leonardo Pacciani-Mori, Samir Suweis, Amos Maritan, Andrea Giometto (2021). Constrained proteome allocation affects coexistence in models of competitive microbial communities. The ISME Journal.

Carlos A. Plata, Deepak Gupta, Sandro Azaele (2020). Asymmetric stochastic resetting: Modeling catastrophic events. Physical Review E.

Meghdad Saeedian, Maxi San Miguel, Raul Toral (2020). Absorbing-state transition in a coevolution model with node and linkstates in an adaptive network: network fragmentation transition atcriticality. New Journal of Physics.

Stefano Garlaschi, Anna Fochesato, Anna Tovo (2020). Upscaling statistical patterns from reduced storage in social and life science big datasets. Entropy.

Carlos A. Plata, David Guéry-Odelin, Emmanuel Trizac, Antonio Prados (2020). Building an irreversible Carnot-like heat engine with an overdamped harmonic oscillator. Journal of Statistical Mechanics: Theory and Experiment.

Anna Tovo, Peter Menzel, Anders Krogh, Marco Cosentino Lagomarsino, Samir Suweis (2020). Taxonomic classification methodf or metagenomics based on core protein families with Core-Kaiju. Nucleic Acids Research.

Saverio Perri, Samir Suweis, Alex Holmes, Prashanth R. Marpu, Dara Entekhabi, Annalisa Molini (2020). River basin salinization as a form of aridity. Proceedings of the National Academy of Science.

Giorgio Nicoletti, Samir Suweis, Amos Maritan (2020). Scaling and criticality in a phenomenological renormalization group. Phys. Rev. Research.

Leonardo Pacciani-Mori, Andrea Giometto, Samir Suweis, Amos Maritan (2020). Dynamic metabolic adaptation can promote species coexistence in competitive communities. PLoS Comput Biol.

Piero Fariselli, Cristian Taccioli, Luca Pagani, Amos Maritan (2020). DNA sequence symmetries from randomness: the origin of the Chargaff’s second parity rule. Briefings in Bioinformatics.

Daniel M. Busiello, Deepak Gupta, Amos Maritan (2020). Entropy production in systems with unidirectional transitions. Physical Review Research.

Carlos A. Plata, David Guéry-Odelin, Emmanuel Trizac, Antonio Prados (2020). Finite-time adiabatic processes: Derivation and speed limit. Physical Review E.

Sreekanth K. Manikandan, Deepak Gupta, Supriya Krishnamurthy (2020). Inferring entropy production from short experiments. Physical Review Letters.

Deepak Gupta, Carlos A. Plata, Arnab Pal (2020). Work fluctuations and Jarzynski equality in stochastic resetting. Physical Review Letters.

Deepak Gupta, Amos Maritan (2020). Thermodynamic uncertainty relations in a linear system. The European Physical Journal B.

Fabio Peruzzo, Mauro Mobilia, Sandro Azaele (2020). Spatial Patterns Emerging from a Stochastic Process Near Criticality. Physical Review X.

Deepak Gupta, Sanjib Sabhapandit (2020). Entropy production for partially observed harmonic systems. Journal of Statistical Mechanics: Theory and Experiment.

Niccolo Anceschi, Jorge Hidalgo, Carlos A. Plata, Tommaso Bellini, Amos Maritan, Samir Suweis (2019). Neutral and niche forces as drivers of species selection. J. Theor. Biol..

Anna Tovo, Samuele Stivanello, Amos Maritan, Samir Suweis, Stefano Favaro, Marco Formentin (2019). Upscaling human activity data: an ecological perspective. arXiv.

Anna Tovo, Marco Formentin, Samir Suweis, Samuele Stivanello, Sandro Azaele, Amos Maritan (2019). Inferring macro‐ecological patterns from local presence/absence data. Oik.

Alberto Testolin, Michele Piccolini, Samir Suweis (2019). Deep learning systems as complex networks. Journal of Complex Networks.

Chengyi Tu, Samir Suweis, Paolo D’Odorico (2019). Impact of globalization on the resilience and sustainability of natural resources. Nature Sustainability.

Silvia Zaoli, Andrea Giometto, Jonathan Giezendanner, Amos Maritan, Andrea Rinaldo (2019). On the probabilistic nature of the species-area relation. Jour. Theor. Biol..

Yongzheng Sun, Wang Li, Hongjun Shi, Donghua Zhao, Sandro Azaele (2019). Finite-time and Fixed-time consensus of multi-agent networks with pinning control and noise perturbation. SIAM Journal on Applied Mathematics.

Giorgia Cona, Loren Koçillari, Alessandro Palombi, Alessandra Bertoldo, Amos Maritan, Maurizio Corbetta (2019). Archetypes of human cognition defined by time preference for reward and their brain correlates: An evolutionary trade-off approach. NeuroImage.

Tatjana Škrbić, Trinh X. Hoang, Amos Maritan, Jayanth R. Banavar, Achille Giacometti (2018). The elixir phase of chain molecules. Proteins: Structure, Function, and Bioinformatics.

Alexander M. Dunhill, William J. Foster, Sandro Azaele, James Sciberras, Richard J. Twitchett (2018). Modelling determinants of extinction across two Mesozoic hyperthermal events. RSPB.

Daniel M. Busiello, Jorge Hidalgo, Amos Maritan (2018). Entropy production for coarse-grained dynamics. New Journal of Physics.

Daniel Maria Busiello, Christopher Jarzynski, O. Raz (2018). Similarities and differences between non-equilibrium steady states and time-periodic driving in diffusive systems. New Journal of Physics.

Charlotte James, Sandro Azaele, Amos Maritan, Filippo Simini (2018). Zipf's and Taylor's laws. Phys. Rev. E.

Paul Balister, József Balogh, Enrico Bertuzzo, Béla Bollobás, Guido Caldarelli, Amos Maritan, Rossana Mastrandrea, Robert Morris, Andrea Rinaldo (2018). River landscapes and optimal channel networks. PNAS.

Loren Koçillari, Piero Fariselli, Antonio Trovato, Flavio Seno, Amos Maritan (2018). Signature of Pareto optimization in the Escherichia coli proteome. Scientific Reports.

Kyle Frankel Davis, Abinash Bhattachan, Paolo D’Odorico, Samir Suweis (2018). A universal model for predicting human migration under climate change: examining future sea level rise in Bangladesh. Environmental Research Letters.

Paolo D’Odorico, Kyle Frankel Davis, Lorenzo Rosa, Joel A. Carr, Davide Chiarelli, Jampel Dell’Angelo, Jessica Gephart, Graham K. MacDonald, David A. Seekell, Samir Suweis, Maria Cristina Rulli (2018). The Global Food‐Energy‐Water Nexus. Reviews of Geophysics.

Rodrigo P. Rocha, Loren Koçillari, Samir Suweis, Maurizio Corbetta, Amos Maritan (2018). Equalization of the network sensitivity enhances predictive power at criticality in a whole-brain model. arXiv.

Anna Tovo, Marco Favretti (2018). The distance decay of similarity in tropical rainforests. A spatial point processes analytical formulation. TBP.

Matteo Martinello, Jorge Hidalgo, Amos Maritan, Serena di Santo, Dietmar Plenz, Miguel Angel Muñoz (2017). Neutral Theory and Scale-Free Neural Dynamics. Physical Review X.

Daniel Maria Busiello, Jorge Hidalgo, Amos Maritan (2017). Entropy production in systems with random transition rates close to equilibrium. Physical Review E.

Francesco Laio, Maria Cristina Rulli, Samir Suweis (2017). The challenge of understanding the water-food nexus complexity. Advances in Water Resources.

Anna Tovo, Samir Suweis, Marco Formentin, Marco Favretti, Igor Volkov, Jayanth R. Banavar, Sandro Azaele, Amos Maritan (2017). Upscaling species richness and abundances in tropical forests. Science Advances.

Fabio Peruzzo, Sandro Azaele (2017). A Phenomenological Spatial Model for Macro-Ecological Patterns in Species-Rich Ecosystems. Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology.

Silvia Zaoli, Andrea Giometto, Amos Maritan, Andrea Rinaldo (2017). Covariations in ecological scaling laws fostered by community dynamics. PNAS.

Daniel Maria Busiello, Samir Suweis, Jorge Hidalgo, Amos Maritan (2017). Explorability and the origin of network sparsity in living systems. Scientific Reports.

Chengyi Tu, Samir Suweis, Jacopo Grilli, Marco Formentin, Amos Maritan (2017). Reconciling cooperation, biodiversity and stability in complex ecological communities. arXiv.

Chengyi Tu, Jacopo Grilli, Friedrich Schuessler, Samir Suweis (2017). Collapse of resilience patterns in generalized Lotka-Volterra dynamics and beyond. Physical Review E.

Chengyi Tu, Rodrigo P. Rocha, Maurizio Corbetta, Sandro Zampieri, Marzo Zorzi, Samir Suweis (2017). Warnings and Caveats in Brain Controllability. NeuroImage.

Thanh-Son Nguyen, Jayanth R. Banavar, Amos Maritan, Trinh X. Hoang (2017). Phase diagram of thick ribbons in a bad solvent. arXiv.

Jacopo Grilli, Matteo Adorisio, Samir Suweis, György Barabás, Jayanth R. Banavar, Stefano Allesina, Amos Maritan (2017). Feasibility and coexistence of large ecological communities. Nature Communications.

Giacomo Sellan, Filippo Simini, Amos Maritan, Jayanth R. Banavar, Thalès de Haulleville, Marijn Bauters, Jean‐Louis Doucet, Hans Beeckman, Tommaso Anfodillo (2017). Testing a general approach to assess the degree of disturbance in tropical forests. Journal of Vegetation Science.

Jorge Hidalgo, Samir Suweis, Amos Maritan (2017). Species coexistence in a neutral dynamics with environmental noise. Journal of Theoretical Biology.

Anna Tovo, Samir Suweis, Marco Formentin, Marco Favretti, Jayanth R. Banavar, Sandro Azaele, Amos Maritan (2016). Biodiversity of Tropical Forests. bioRxiv.

Chengyi Tu, Joel A. Carr, Samir Suweis (2016). A Data Driven Network Approach to Rank Countries Production Diversity and Food Specialization. PLOS ONE.

Rodrigo P. Rocha, Wagner Figueiredo, Samir Suweis, Amos Maritan (2016). Species survival and scaling laws in hostile and disordered environments. Physical Review E.

Joel A. Carr, Paolo D’Odorico, Samir Suweis, David A. Seekell (2016). What commodities and countries impact inequality in the global food system?. Environmental Research Letters.

Alessandro Manacorda, Carlos A. Plata, Antonio Lasanta, Andrea Puglisi, Antonio Prados (2016). Lattice Models for Granular-Like Velocity Fields: Hydrodynamic Description. J. Stat. Phys..

Sandro Azaele, Samir Suweis, Jacopo Grilli, Igor Volkov, Jayanth R. Banavar, Amos Maritan (2016). Statistical mechanics of ecological systems: Neutral theory and beyond. Reviews of Modern Physics.

Anna Tovo, Marco Formentin, Marco Favretti, Amos Maritan (2016). Application of optimal data-based binning method to spatial analysis of ecological datasets. SpaSta.

Jorge Hidalgo, Jacopo Grilli, Samir Suweis, Amos Maritan, Miguel Angel Muñoz (2016). Cooperation, competition and the emergence of criticality in communities of adaptive systems. Journal of Statistical Mechanics: Theory and Experiment.